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What is scientific-agents?

k-dense-ai/scientific-agents — explained in plain English

Analysis updated 2026-05-18

47Audience · researcherComplexity · 1/5Setup · easy

In one sentence

A library of 503 AGENTS.md expert profiles that make AI coding agents reason like a specialist in a given scientific or engineering field.

Mindmap

mindmap
  root((repo))
    What it does
      503 expert profiles
      Field specific reasoning
      Works across AI tools
    Tech stack
      Markdown
      AGENTS.md standard
    Use cases
      Domain specific reasoning
      Claude Code import
      Browse catalog
    Audience
      Researchers

Code map

Detail Auto

An interactive map of this repo's files and how they connect — its source is parsed live in your browser. Click Visualize to build it.

filefunction / class

What do people build with it?

USE CASE 1

Drop a profession's AGENTS.md file into a project so the AI agent reasons like that specialist

USE CASE 2

Import an AGENTS.md profile into Claude Code via a CLAUDE.md file

USE CASE 3

Browse the catalog.json index to find a profile matching your scientific field

What is it built with?

MarkdownAGENTS.md standard

How does it compare?

k-dense-ai/scientific-agents0xsufi/fable-jailbreakafumu/openteam
Stars474747
LanguageJavaScriptTypeScript
Setup difficultyeasyeasymoderate
Complexity1/52/52/5
Audienceresearcherdevelopergeneral

Figures from each repo's GitHub metadata at analysis time.

How do you get it running?

Difficulty · easy Time to first run · 5min
License is not stated in the available content.

So what is it?

This repository holds a collection of 503 expert profiles, one for each scientific or engineering profession, designed to change how an AI coding agent reasons about problems in that field. Each profile is a plain Markdown file called AGENTS.md that describes how a senior practitioner in that discipline actually thinks: what databases and instruments they reach for, how they frame a question, what controls they apply, how they evaluate a claim, what mistakes they watch for, and how they report findings. Drop one into a project and the AI agent stops responding like a general-purpose assistant and starts reasoning in a way that someone in that profession would recognize. The profiles work across several popular AI coding tools without modification: Cursor, Claude Code, OpenAI Codex, Google Antigravity, and OpenCode all read AGENTS.md files from the project root. The format follows an open standard, so the same file can be reused across tools or shared across a team. For Claude Code specifically, you create a CLAUDE.md file that imports the AGENTS.md profile, since Claude Code's native filename is different. The profiles are built through a research process rather than written as generic instruction prompts. Before each one is drafted, the team gathers field-specific information across multiple dimensions: foundational theory, how experts in that field define a problem, relevant tools and data sources, statistical methods, known failure modes, communication conventions, and any relevant regulations or ethics requirements. The goal is to collect specific, verifiable details rather than broad statements that could apply to any science. A finished profile is tested by checking whether swapping in a different profession's name would make the sentences still read as true. If they do, those parts are cut or made more specific. Examples of included professions mentioned in the README include developmental biologist, clinical epidemiologist, bioinformatician, and radio astronomer. The full catalog is indexed in a catalog.json file in the repository. The full README is longer than what was shown.

Copy-paste prompts

Prompt 1
Add the bioinformatician AGENTS.md profile to my project and reason about this dataset like that expert would.
Prompt 2
Show me the catalog.json index and find a profile for clinical epidemiology.
Prompt 3
Create a CLAUDE.md that imports the radio astronomer AGENTS.md profile for Claude Code.

Frequently asked questions

What is scientific-agents?

A library of 503 AGENTS.md expert profiles that make AI coding agents reason like a specialist in a given scientific or engineering field.

What license does scientific-agents use?

License is not stated in the available content.

How hard is scientific-agents to set up?

Setup difficulty is rated easy, with roughly 5min to a first successful run.

Who is scientific-agents for?

Mainly researcher.

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